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exercism fetch rust protein-translation

Protein Translation

Translate RNA sequences into proteins.

RNA can be broken into three nucleotide sequences called codons, and then translated to a polypeptide like so:

RNA: "AUGUUUUCU" => translates to

Codons: "AUG", "UUU", "UCU" => which become a polypeptide with the following sequence =>

Protein: "Methionine", "Phenylalanine", "Serine"

There are 64 codons which in turn correspond to 20 amino acids; however, all of the codon sequences and resulting amino acids are not important in this exercise. If it works for one codon, the program should work for all of them. However, feel free to expand the list in the test suite to include them all.

There are also three terminating codons (also known as 'STOP' codons); if any of these codons are encountered (by the ribosome), all translation ends and the protein is terminated.

All subsequent codons after are ignored, like this:

RNA: "AUGUUUUCUUAAAUG" =>

Codons: "AUG", "UUU", "UCU", "UAG", "AUG" =>

Protein: "Methionine", "Phenylalanine", "Serine"

Note the stop codon terminates the translation and the final methionine is not translated into the protein sequence.

Below are the codons and resulting Amino Acids needed for the exercise.

Codon Protein
AUG Methionine
UUU, UUC Phenylalanine
UUA, UUG Leucine
UCU, UCC, UCA, UCG Serine
UAU, UAC Tyrosine
UGU, UGC Cysteine
UGG Tryptophan
UAA, UAG, UGA STOP

Learn more about protein translation on Wikipedia

Rust Installation

Refer to the exercism help page for Rust installation and learning resources.

Writing the Code

Execute the tests with:

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$ cargo test

All but the first test have been ignored. After you get the first test to pass, remove the ignore flag (#[ignore]) from the next test and get the tests to pass again. The test file is located in the tests directory. You can also remove the ignore flag from all the tests to get them to run all at once if you wish.

Make sure to read the Modules chapter if you haven't already, it will help you with organizing your files.

Feedback, Issues, Pull Requests

The exercism/rust repository on GitHub is the home for all of the Rust exercises. If you have feedback about an exercise, or want to help implement new exercises, head over there and create an issue. Members of the rust track team are happy to help!

If you want to know more about Exercism, take a look at the contribution guide.

Source

Tyler Long

Submitting Incomplete Solutions

It's possible to submit an incomplete solution so you can see how others have completed the exercise.